Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
iMEF
cell type
iMEF (Setdb1 cKO iMEF)
time point
no treatment
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The chromatin was digested with MNase. After IP, stringent washes, RNase and proteinase K treatment, DNA was extracted using PCR purification kit (QIAGEN). ChIP-seq library was prepared with KAPA hyperprep kit (KAPA biosystems) for the single read Illumina HiSeq 1500 platform. ChIP-seq library were prepared with KAPA hyperprep kit (KAPA biosystems) for the single read Illumina HiSeq 1500 platform.

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
81132192
Reads aligned (%)
92.9
Duplicates removed (%)
60.8
Number of peaks
2840 (qval < 1E-05)

mm9

Number of total reads
81132192
Reads aligned (%)
92.4
Duplicates removed (%)
60.7
Number of peaks
2897 (qval < 1E-05)

Base call quality data from DBCLS SRA