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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: iPSC derived cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX3100892
Lu-iPSC6 H3K27Me3 ChipSeq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Pluripotent stem cell
Cell type
iPSC derived cells
NA
NA
Attributes by original data submitter
Sample
isolate
not applicable
age
not applicable
biomaterial_provider
not applicable
sex
not applicable
tissue
not applicable
cell_line
Lu-iPSC6
Sequenced DNA Library
library_name
Lu-iPSC6_H3K27Me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
154860003
Reads aligned (%)
81.9
Duplicates removed (%)
47.5
Number of peaks
50319 (qval < 1E-05)
hg19
Number of total reads
154860003
Reads aligned (%)
81.4
Duplicates removed (%)
48.8
Number of peaks
49488 (qval < 1E-05)
Base call quality data from
DBCLS SRA