SRX3088617
GSM2740591: 4L-SCR NR2F2 ChIPseq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR2F2

Cell type

Cell type Class
Epidermis
Cell type
Melanoma cell line
NA
NA

Attributes by original data submitter

Sample

source_name
Melanoma cell line
cell type
WM239-derived 113/6-4L melanoma cell line
chip antibody
NR2F2 antibody (Active Motif, Cat. 61214)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-IT High Sensitivity Kit (Active Motif), according the manufacturer recommendations.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
86948308
Reads aligned (%)
97.9
Duplicates removed (%)
73.7
Number of peaks
3388 (qval < 1E-05)

hg19

Number of total reads
86948308
Reads aligned (%)
97.6
Duplicates removed (%)
74.4
Number of peaks
2324 (qval < 1E-05)

Base call quality data from DBCLS SRA