Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
Tconv
NA
NA

Attributes by original data submitter

Sample

source_name
Spleen
strain
C57BL/6
genotype
WT
cell type
CD4+FoxP3- Tconv
transduction
Empty vector

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were transduced with retrovirus coding WT or each mutant FoxP3 and sorted for viable Thy1.1hi after 72 hr of transduction. Chromatin IPed with specific Abs was eluted from the Protein-G beads, treated with 1µg DNase-free RNase (Roche) for 30 min at 37°C and with Proteinase K (Roche) for 2 hrs at 37°C followed by reverse cross-linking by leaving the plate at 65°C overnight. DNA from reverse cross-linked material was purified with SPRI beads (Agencourt AMPure XP beads, Beckman Coulter); and sequential steps of end-repair, A-base addition, adaptor-ligation and PCR amplification (15 cycles) were performed to prepare the ChIP-seq library for each sample.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
67045450
Reads aligned (%)
86.1
Duplicates removed (%)
86.4
Number of peaks
361 (qval < 1E-05)

mm9

Number of total reads
67045450
Reads aligned (%)
85.9
Duplicates removed (%)
86.5
Number of peaks
371 (qval < 1E-05)

Base call quality data from DBCLS SRA