Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZC3H8

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
HCT116 cell culture
cell line
HCT116
antibody
ZC3H8 (full length; developed in this study)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP libraries were prepared with the TruSeq DNA Sample Kit (Illumina #FC-121-2001) according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
20808612
Reads aligned (%)
55.6
Duplicates removed (%)
41.1
Number of peaks
1570 (qval < 1E-05)

hg38

Number of total reads
20808612
Reads aligned (%)
57.2
Duplicates removed (%)
39.9
Number of peaks
1519 (qval < 1E-05)

Base call quality data from DBCLS SRA