SRX3058112
GSM2730378: CD2Cre-NA-1; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Thymus
NA
NA

Attributes by original data submitter

Sample

source_name
thymus
strain
C57BL/6
genotype
NUP214-ABL1 positive

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
all libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
54186069
Reads aligned (%)
91.0
Duplicates removed (%)
26.8
Number of peaks
15356 (qval < 1E-05)

mm9

Number of total reads
54186069
Reads aligned (%)
90.8
Duplicates removed (%)
26.9
Number of peaks
15401 (qval < 1E-05)

Base call quality data from DBCLS SRA