SRX3056465
GSM2729841: C62 WCE; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cells
cell type
mouse embryonic stem cells
cell line
Blm-/-;Ago1,2,3,4-/-;CreERT2
antibody
--

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and bound DNA fragments were isolated with antibody. Genomic DNA libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14970122
Reads aligned (%)
97.4
Duplicates removed (%)
13.6
Number of peaks
389 (qval < 1E-05)

mm9

Number of total reads
14970122
Reads aligned (%)
97.1
Duplicates removed (%)
13.7
Number of peaks
456 (qval < 1E-05)

Base call quality data from DBCLS SRA