Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cells
cell type
mouse embryonic stem cells
genotype
Setdb1 conditional KO
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. See http://bioinformatics-renlab.ucsd.edu/RenLabLibraryProtocolV1.pdf

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
30084776
Reads aligned (%)
95.2
Duplicates removed (%)
35.8
Number of peaks
1780 (qval < 1E-05)

mm9

Number of total reads
30084776
Reads aligned (%)
95.0
Duplicates removed (%)
35.9
Number of peaks
1811 (qval < 1E-05)

Base call quality data from DBCLS SRA