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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Cerebellar granular neuron progenitors
ATCC
MeSH
RIKEN BRC
SRX3041970
GSM2719377: Input, Mus Musculus CGN DMSO , biological replicate 1; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Neural
Cell type
Cerebellar granular neuron progenitors
NA
NA
Attributes by original data submitter
Sample
source_name
cerebellum, granular neurons
antibody
none, Input
agent
CGN DMSO
strain
NMRI
developmental stage
P7, DIV2
genotype
Wildtype
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Roidl et al, Stem Cells. 2016 Jan;34(1):233-45. doi: 10.1002/stem.2187. 1 - NEBNext® Ultra DNA Library Prep Kit for Illumina® Minus Size Selection (E7370S/L)
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
57442493
Reads aligned (%)
97.5
Duplicates removed (%)
8.5
Number of peaks
286 (qval < 1E-05)
mm9
Number of total reads
57442493
Reads aligned (%)
97.3
Duplicates removed (%)
9.1
Number of peaks
308 (qval < 1E-05)
Base call quality data from
DBCLS SRA