SRX3041968
GSM2719375: H3K79me2, ChIPseq, Mus Musculus CGNP SGC0946, biological replicate 1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K79me2

Cell type

Cell type Class
Neural
Cell type
Cerebellar granular neuron progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
cerebellum, granular neuron progenitors
antibody
H3K79me2
agent
CGNP SGC0946
strain
NMRI
developmental stage
P7, DIV1
genotype
Wildtype

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Roidl et al, Stem Cells. 2016 Jan;34(1):233-45. doi: 10.1002/stem.2187. 1 - NEBNext® Ultra DNA Library Prep Kit for Illumina® Minus Size Selection (E7370S/L)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27936073
Reads aligned (%)
96.3
Duplicates removed (%)
2.4
Number of peaks
7536 (qval < 1E-05)

mm9

Number of total reads
27936073
Reads aligned (%)
96.3
Duplicates removed (%)
2.4
Number of peaks
7508 (qval < 1E-05)

Base call quality data from DBCLS SRA