SRX3038071
GSM2718407: ATACseq IPSC GFP+ rep1; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
ATACseq_IPSC_GFP+
strain
rtTA3-OKSM-Oct4GFP
genotype
het-het-het
cell type
MEF derived induced pluripotent stem cells

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
DNA was tagnemted with Illumina Tagment DNA Buffer (Cat. No. 15027866) and 2.5 µl of Tagment DNA Enzyme 1 (Cat. No. 15027865). Transposed DNA libraries were purified using Agencourt AMPure XP beads (Beckman Coulter, Cat. No. A63880).

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
46151402
Reads aligned (%)
91.6
Duplicates removed (%)
40.6
Number of peaks
14605 (qval < 1E-05)

mm9

Number of total reads
46151402
Reads aligned (%)
91.6
Duplicates removed (%)
40.7
Number of peaks
14653 (qval < 1E-05)

Base call quality data from DBCLS SRA