Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP Bag1L WT cells
treatment
10 nM DHT (4 h)
phenotype
Bag-1L WT

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslinked cells were lysed using a Sarkosyl-containing lysis buffer. Chromatin was isolated, sheared and subjected to immunoprecipitation with an anti-AR antibody. Libraries were prepared using 5 ng ChIP DNA and the ThruPLEX DNA-seq kit (Rubicon Genomics) according to the manufacturer's instructions. ChIP-seq. Libraries were sequenced on an Illumina NS500 Single-End 75 bp platform.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
37315670
Reads aligned (%)
99.9
Duplicates removed (%)
4.7
Number of peaks
459 (qval < 1E-05)

hg19

Number of total reads
37315670
Reads aligned (%)
99.9
Duplicates removed (%)
5.3
Number of peaks
425 (qval < 1E-05)

Base call quality data from DBCLS SRA