SRX3032254
GSM2716863: pSA269 wing ATAC; Drosophila melanogaster; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Larvae
Cell type
Imaginal wing disc
NA
NA

Attributes by original data submitter

Sample

source_name
wing discs
age
3rd instar-wandering
treatment
Hand Dissections
genotype
transgenic VK37(2L)22A3 insertion

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Eye-antennal imaginal Disc were dissected from 3rd instar wandering larvae. The discs were immediately lysed and ATAC-seq was performed Tn5 and nextera library prep

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
16779395
Reads aligned (%)
54.8
Duplicates removed (%)
53.6
Number of peaks
6208 (qval < 1E-05)

dm3

Number of total reads
16779395
Reads aligned (%)
55.0
Duplicates removed (%)
52.2
Number of peaks
5952 (qval < 1E-05)

Base call quality data from DBCLS SRA