SRX3025346
ChIP-seq of Mus musculus: no tam SIG

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Lung
Cell type
Lung epithelium
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6
sex
not collected
tissue
primary lung epithelial cultures
genotype
Sox2-SIG cells, -Tam, Sox2 ChIP
treatment
Vehicle, Sox2 ChIP
development stage
6-14 weeks

Sequenced DNA Library

library_name
no tam, Sox2 ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
38404984
Reads aligned (%)
26.8
Duplicates removed (%)
11.6
Number of peaks
8498 (qval < 1E-05)

mm9

Number of total reads
38404984
Reads aligned (%)
26.7
Duplicates removed (%)
11.9
Number of peaks
8524 (qval < 1E-05)

Base call quality data from DBCLS SRA