SRX3021903
GSM2711974: Hd1 loxlox Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived haemogenic endothelium
NA
NA

Attributes by original data submitter

Sample

source_name
haemogenic endothelium
strain
C57BL/6
cell type
ES-derived haemogenic endothelium
passage
25-30 passages

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP performed with HighCell ChIP kit from Diagenode

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19052970
Reads aligned (%)
97.5
Duplicates removed (%)
10.8
Number of peaks
315 (qval < 1E-05)

mm9

Number of total reads
19052970
Reads aligned (%)
97.4
Duplicates removed (%)
10.9
Number of peaks
273 (qval < 1E-05)

Base call quality data from DBCLS SRA