Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
PBMC
donor
YF-M15-660
days post yfv-17d
180
cell type
sorted A2-NS4B214 tetramer+ CD8 T cells
tissue
PBMC

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
DNA from the transposase reaction was purified via a Qiagen MinElute kit. PCR amplification was performed using Nextera PCR primers. The final libraries were quantified using a KAPA Library Quantification Kit and sequenced on an Illumina HiSeq 2500 by ELIM Biopharm.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
7501452
Reads aligned (%)
93.3
Duplicates removed (%)
31.5
Number of peaks
9600 (qval < 1E-05)

hg19

Number of total reads
7501452
Reads aligned (%)
92.8
Duplicates removed (%)
31.8
Number of peaks
9545 (qval < 1E-05)

Base call quality data from DBCLS SRA