Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
PBMC
donor
YF-HW-11-066
days post yfv-17d
1277.5
cell type
sorted CD45RA+ CCR7+ CD8 T cells
tissue
PBMC

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
DNA from the transposase reaction was purified via a Qiagen MinElute kit. PCR amplification was performed using Nextera PCR primers. The final libraries were quantified using a KAPA Library Quantification Kit and sequenced on an Illumina HiSeq 2500 by ELIM Biopharm.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
7533142
Reads aligned (%)
88.2
Duplicates removed (%)
54.4
Number of peaks
2363 (qval < 1E-05)

hg19

Number of total reads
7533142
Reads aligned (%)
87.7
Duplicates removed (%)
54.9
Number of peaks
2359 (qval < 1E-05)

Base call quality data from DBCLS SRA