SRX3010346
GSM2705876: MCM6 16dC ChIP rep2; Saccharomyces cerevisiae; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
whole cell
genotype/variation
WT
cell cycle stage
S phase
release condition
YPD, 16 degree C
chip protein
Mcm6-3HA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The HA-tagged protein-DNA were isolated with anti-HA antibody (12CA5, Roche, Cat. No. 11 583 816 001). Libraries were prepared according to NEBNext® Ultra™ DNA Library Prep Kit for Illumina® (E7370).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

sacCer3

Number of total reads
4738550
Reads aligned (%)
34.3
Duplicates removed (%)
8.0
Number of peaks
426 (qval < 1E-05)

Base call quality data from DBCLS SRA