Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Embryo
Cell type
Facial prominence
NA
NA

Attributes by original data submitter

Sample

age
10.5 day
dev stage
embryonic
donor ID
ENCDO956IXV
tissue
embryonic facial prominence
sex
pooled male and female
health state
healthy
sample type
tissue
lab
Len Pennacchio, LBNL

Sequenced DNA Library

library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/862389c9-38b6-4e76-8b84-d82fb9a4c6cf/@@download/attachment/Ecker_Replication_Summary.png general protocol: https://www.encodeproject.org/documents/665c8f16-3724-4ab7-aa29-688f396bcd4f/@@download/attachment/Ecker_Protocol_Summary.png general protocol: https://www.encodeproject.org/documents/8f3cbe33-cf8f-4f26-b76b-d14a3b9721bd/@@download/attachment/Ecker_Methyl_Protocol_022315.pdf general protocol: https://www.encodeproject.org/documents/9d5f346e-88d3-45e2-b28a-2b26f537490f/@@download/attachment/Ecker_Methyl_protocol_v030114.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
622683749
Reads aligned (%)
90.1
Coverage rate (×)
10.9
Number of hyper MRs
219257 (qval < 1E-05)

mm9

Number of total reads
622683749
Reads aligned (%)
91.3
Coverage rate (×)
10.9
Number of hyper MRs
218714 (qval < 1E-05)

Base call quality data from DBCLS SRA