Antigen

Antigen Class

Histone

Antigen

H3K36me3

Cell type

Cell type Class

Others

Cell type

Thyroid Gland

MeSH Description

A highly vascularized endocrine gland consisting of two lobes joined by a thin band of tissue with one lobe on each side of the TRACHEA. It secretes THYROID HORMONES from the follicular cells and CALCITONIN from the parafollicular cells thereby regulating METABOLISM and CALCIUM level in blood, respectively.

Sample

dev stage

adult

sex

male

sample type

tissue

donor ID

ENCDO451RUA

age

54 year

lab

Bradley Bernstein, Broad

tissue

thyroid gland

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/1e7b76e9-f52e-46b5-bbff-cd296fc4244a/@@download/attachment/Epigenomics_Mag%20Bead_ChIP_Protocol_v2.0.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

98305320

Reads aligned (%)

98.5

Duplicates removed (%)

22.4

Number of peaks

2094 (qval < 1E-05)

hg19

Number of total reads

98305320

Reads aligned (%)

97.2

Duplicates removed (%)

24.2

Number of peaks

1493 (qval < 1E-05)