Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Cardiovascular

Cell type

Aorta, Thoracic

MeSH Description

The portion of the descending aorta proceeding from the arch of the aorta and extending to the DIAPHRAGM, eventually connecting to the ABDOMINAL AORTA.

Sample

dev stage

adult

sex

male

sample type

tissue

donor ID

ENCDO845WKR

age

37 year

lab

Bradley Bernstein, Broad

tissue

thoracic aorta

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

49625794

Reads aligned (%)

98.9

Duplicates removed (%)

7.3

Number of peaks

24940 (qval < 1E-05)

hg19

Number of total reads

49625794

Reads aligned (%)

98.5

Duplicates removed (%)

7.8

Number of peaks

24780 (qval < 1E-05)