Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Colon, Sigmoid
MeSH Description
A segment of the COLON between the RECTUM and the descending colon.

Attributes by original data submitter

Sample

dev_stage
adult
tissue
sigmoid colon
sample_type
tissue
lab
Bradley Bernstein, Broad
age
53 year
donor ID
ENCDO793LXB
sex
female

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
48563156
Reads aligned (%)
98.3
Duplicates removed (%)
3.6
Number of peaks
1401 (qval < 1E-05)

hg19

Number of total reads
48563156
Reads aligned (%)
97.2
Duplicates removed (%)
4.8
Number of peaks
1152 (qval < 1E-05)

Base call quality data from DBCLS SRA