SRX3010135
GSM2700597: ChIP-seq from body of pancreas (ENCLB264NMN); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Pancreas
Cell type
Body of pancreas
NA
NA

Attributes by original data submitter

Sample

dev_stage
adult
tissue
body of pancreas
sample_type
tissue
lab
Bradley Bernstein, Broad
age
53 year
donor ID
ENCDO793LXB
sex
female

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33372022
Reads aligned (%)
90.1
Duplicates removed (%)
10.4
Number of peaks
15633 (qval < 1E-05)

hg19

Number of total reads
33372022
Reads aligned (%)
89.0
Duplicates removed (%)
11.6
Number of peaks
15398 (qval < 1E-05)

Base call quality data from DBCLS SRA