Antigen

Antigen Class

TFs and others

Antigen

BRD4

Cell type

Cell type Class

Blood

Cell type

K-562

Primary Tissue

Blood

Tissue Diagnosis

Leukemia Chronic Myelogenous

Sample

dev_stage

adult

passage number

6

cell_line

K562

sample_type

immortalized cell line

lab

Bradley Bernstein, Broad

age

53 year

donor ID

ENCDO000AAD

health state

chronic myelogenous leukemia (CML)

sex

female

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/f35827f6-da4a-42a6-b4bd-9e1b8b6c1663/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v2.0.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

38321598

Reads aligned (%)

94.8

Duplicates removed (%)

6.5

Number of peaks

2973 (qval < 1E-05)

hg19

Number of total reads

38321598

Reads aligned (%)

93.5

Duplicates removed (%)

10.0

Number of peaks

3519 (qval < 1E-05)