Antigen

Antigen Class

TFs and others

Antigen

CBX2

Cell type

Cell type Class

Lung

Cell type

A549

Primary Tissue

Lung

Tissue Diagnosis

Carcinoma

Sample

dev_stage

adult

passage number

6

cell_line

A549

sample_type

immortalized cell line

lab

Bradley Bernstein, Broad

age

58 year

donor ID

ENCDO000AAZ

sex

male

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

33969380

Reads aligned (%)

98.1

Duplicates removed (%)

18.4

Number of peaks

991 (qval < 1E-05)

hg19

Number of total reads

33969380

Reads aligned (%)

97.0

Duplicates removed (%)

19.7

Number of peaks

833 (qval < 1E-05)