Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Cardiovascular

Cell type

Heart Ventricles

MeSH Description

The lower right and left chambers of the heart. The right ventricle pumps venous BLOOD into the LUNGS and the left ventricle pumps oxygenated blood into the systemic arterial circulation.

Sample

dev stage

adult

sex

female

sample type

tissue

donor ID

ENCDO793LXB

age

53 year

lab

Bradley Bernstein, Broad

tissue

heart left ventricle

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

78177730

Reads aligned (%)

98.1

Duplicates removed (%)

10.4

Number of peaks

1727 (qval < 1E-05)

hg19

Number of total reads

78177730

Reads aligned (%)

97.2

Duplicates removed (%)

11.5

Number of peaks

1329 (qval < 1E-05)