SRX3010001
GSM2698887: ChIP-seq from spleen (ENCLB613QLF); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Others
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

dev_stage
adult
tissue
spleen
sample_type
tissue
lab
Bradley Bernstein, Broad
age
53 year
donor ID
ENCDO793LXB
sex
female

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
118756606
Reads aligned (%)
94.2
Duplicates removed (%)
41.2
Number of peaks
39034 (qval < 1E-05)

hg19

Number of total reads
118756606
Reads aligned (%)
93.7
Duplicates removed (%)
42.0
Number of peaks
38466 (qval < 1E-05)

Base call quality data from DBCLS SRA