SRX300949
Histone H3K27me3 ChIP-Seq of Fetal Muscle, Trunk

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Muscle
Cell type
Fetal muscle
NA
NA

Attributes by original data submitter

Sample

MOLECULE
genomic DNA
DISEASE
None
BIOMATERIAL_PROVIDER
University of Washington, Congenital Defects Lab. Ian Glass
BIOMATERIAL_TYPE
Primary Tissue
TISSUE_TYPE
Fetal Muscle, Trunk
TISSUE_DEPOT
UW
COLLECTION_METHOD
fetal
DONOR_ID
H-24851
DONOR_AGE
day 115
DONOR_HEALTH_STATUS
NA
DONOR_SEX
Female
DONOR_ETHNICITY
NA
sample_term_id
UBERON_0001774

Sequenced DNA Library

library_name
Histone.DS23036
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Single read - Illumina

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35389279
Reads aligned (%)
74.3
Duplicates removed (%)
8.1
Number of peaks
15049 (qval < 1E-05)

hg19

Number of total reads
35389279
Reads aligned (%)
74.0
Duplicates removed (%)
8.4
Number of peaks
14888 (qval < 1E-05)

Base call quality data from DBCLS SRA