SRX3008835
GSM2705081: Treg ATAC matched biological replicate 3 technical replicate 1; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Treg
NA
NA

Attributes by original data submitter

Sample

source_name
Treg primary cell
cell line
--
cell type
Sorted primary Treg cells
Sex
male

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Tn5 transposition Nextera

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29241664
Reads aligned (%)
67.1
Duplicates removed (%)
38.7
Number of peaks
6825 (qval < 1E-05)

hg19

Number of total reads
29241664
Reads aligned (%)
66.7
Duplicates removed (%)
39.0
Number of peaks
6739 (qval < 1E-05)

Base call quality data from DBCLS SRA