Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Blood

Cell type

Th17 Cells

MeSH Description

A subset of helper-effector T-lymphocytes which synthesize and secrete INTERLEUKINS IL-17; IL-17F; and IL-22. These cytokines are involved in host defenses and tissue inflammation in autoimmune diseases.

Sample

source_name

Th17 primary cell

cell line

--

cell type

Sorted primary Th17 cells

Sex

male

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

Tn5 transposition Nextera

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

16679494

Reads aligned (%)

66.9

Duplicates removed (%)

43.0

Number of peaks

4421 (qval < 1E-05)

hg19

Number of total reads

16679494

Reads aligned (%)

66.5

Duplicates removed (%)

43.1

Number of peaks

4417 (qval < 1E-05)