Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Natural killer cells
NA
NA

Attributes by original data submitter

Sample

source_name
Spleen
tissue
spleen
cell type
NK cells
genotype
wildtype
background strain
C57BL6

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
WT and KO NK cells ( CD3-CD5- NK1.1+ NKp46+) were isolated and flow sorted from spleen and 50,000 of each geneotype were used for transposition in triplicate. ATAC-seq libraries were prepared as described in Buenrostro et al (Buenrostro et al. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. 2013. Nature Methods 10, 1213-1218, doi:10.1038/nmeth.2688

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
62379434
Reads aligned (%)
73.0
Duplicates removed (%)
28.5
Number of peaks
32495 (qval < 1E-05)

mm9

Number of total reads
62379434
Reads aligned (%)
72.9
Duplicates removed (%)
28.6
Number of peaks
32450 (qval < 1E-05)

Base call quality data from DBCLS SRA