Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Embryo

Cell type

Embryonic brains

NA

NA

Sample

source_name

E15.5 neurons, Tau::EGFP+

genotype

Tau::EGFP+/-

cell type

E15.5 cortex

time post dox

NA

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

Cells were trypsinzed in 0.05% trypsin and processed at different time points post-dox. From day 5, cells were FAC sorted by TauEGFP. ATAC-seq protocol outlined by Buenrostro, et al (Nat. Methods, 2013)

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

52447208

Reads aligned (%)

83.7

Duplicates removed (%)

71.6

Number of peaks

7425 (qval < 1E-05)

mm9

Number of total reads

52447208

Reads aligned (%)

83.6

Duplicates removed (%)

71.7

Number of peaks

7436 (qval < 1E-05)