Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Embryo

Cell type

Embryonic brains

NA

NA

Sample

source_name

E15.5 neurons, Tau::EGFP+

genotype

Tau::EGFP+/-

cell type

E15.5 cortex

time post dox

NA

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

Cells were trypsinzed in 0.05% trypsin and processed at different time points post-dox. From day 5, cells were FAC sorted by TauEGFP. ATAC-seq protocol outlined by Buenrostro, et al (Nat. Methods, 2013)

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

54506659

Reads aligned (%)

84.6

Duplicates removed (%)

70.9

Number of peaks

1874 (qval < 1E-05)

mm9

Number of total reads

54506659

Reads aligned (%)

84.5

Duplicates removed (%)

71.1

Number of peaks

1868 (qval < 1E-05)