Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
RAW 264.7
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
Macrophages
cell type
RAW 264.7 Macrophages
genotype
Parp14 -/-
strain
BALB/c
chip antibody
H3K27ac (abcam, ab4729)
treatment
treated 1h LPS

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with specific antibody. DNA libraries were prepared for HiSeq2000 sequencing as previously described (Ostuni, 2013).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
36089977
Reads aligned (%)
96.9
Duplicates removed (%)
13.2
Number of peaks
32243 (qval < 1E-05)

mm9

Number of total reads
36089977
Reads aligned (%)
96.8
Duplicates removed (%)
13.2
Number of peaks
32279 (qval < 1E-05)

Base call quality data from DBCLS SRA