SRX2982447
ChIP-seq of GFP tagged Sha in WT ovary

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Adult
Cell type
Ovary
NA
NA

Attributes by original data submitter

Sample

strain
rhiP-GFP-Sha
age
2-4 days
sex
female
tissue
ovary
sample_type
DNA
custom name
GFP ChIP for rhiP-GFP-Sha ovary

Sequenced DNA Library

library_name
ChIP-seq of GFP tagged Sha in WT ovary
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
29656878
Reads aligned (%)
92.3
Duplicates removed (%)
31.7
Number of peaks
1123 (qval < 1E-05)

dm3

Number of total reads
29656878
Reads aligned (%)
92.6
Duplicates removed (%)
30.5
Number of peaks
1006 (qval < 1E-05)

Base call quality data from DBCLS SRA