Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Neural
Cell type
Brain
MeSH Description
The part of CENTRAL NERVOUS SYSTEM that is contained within the skull (CRANIUM). Arising from the NEURAL TUBE, the embryonic brain is comprised of three major parts including PROSENCEPHALON (the forebrain); MESENCEPHALON (the midbrain); and RHOMBENCEPHALON (the hindbrain). The developed brain consists of CEREBRUM; CEREBELLUM; and other structures in the BRAIN STEM.

Attributes by original data submitter

Sample

strain
FVBN
age
3 months
body_site
brain
sex
female
sample_type
Input
tissue_type
microdissected tissue

Sequenced DNA Library

library_name
SVZ_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
32757290
Reads aligned (%)
98.3
Duplicates removed (%)
14.8
Number of peaks
695 (qval < 1E-05)

mm9

Number of total reads
32757290
Reads aligned (%)
98.1
Duplicates removed (%)
14.8
Number of peaks
783 (qval < 1E-05)

Base call quality data from DBCLS SRA