Curated Sample Data


Genome
ce10
Antigen Class
Histone
Antigen
H3K4me3
Cell type Class
Larvae
Cell type
L4

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
set-9set-26_whole_worm
genotype
set-9 set-26
developmental stage
L4
chip antibody
H3K4me3 (Millipore, 17-614, lot:2756917)

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslinked protein-DNA complex were isolated with antibody. ChIP-seqw libraries were prepared for sequencing using NEBNext® Ultra™ II DNA Library Prep Kit for Illumina® (NEB)

Platform Information


instrument_model
Illumina HiSeq 2500

External Database Query

Logs in read processing pipeline


Number of total reads
23051447
Reads aligned (%)
88.2
Duplicates removed (%)
15.5
Number of peaks
5400 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA