Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
Mixed embryo
NA
NA

Attributes by original data submitter

Sample

source_name
mixed stage embryos
strain
dpy-21(y607)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The embryo extract was prepared and the immunoprecipitation was perfromed as in Kruesi et al. (2013). For each sample, 6 μg of H4K20me1 antibody was used for 2 mg embryo extract. The library construction was performed as in Kruesi et al. (2013).

Sequencing Platform

instrument_model
Illumina HiSeq 4000

ce11

Number of total reads
135691956
Reads aligned (%)
89.9
Duplicates removed (%)
39.3
Number of peaks
0 (qval < 1E-05)

ce10

Number of total reads
135691956
Reads aligned (%)
89.9
Duplicates removed (%)
39.3
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA