SRX2954067
GSM2683108: H3K4me3 WM164 Parent (P2); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Epidermis
Cell type
WM164
Primary Tissue
Skin
Tissue Diagnosis
Melanoma

Attributes by original data submitter

Sample

source_name
WM164 melanoma cells
cell line
WM164
chip antibody
H3K4me3 Active motif (39159)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The extraction was done according to active motif enzymatic chip kit(53009) Illumina Truseq ChIP library preparation, with Pippin prep size selection

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24331482
Reads aligned (%)
91.3
Duplicates removed (%)
20.5
Number of peaks
2074 (qval < 1E-05)

hg19

Number of total reads
24331482
Reads aligned (%)
90.4
Duplicates removed (%)
21.7
Number of peaks
1907 (qval < 1E-05)

Base call quality data from DBCLS SRA