SRX2953982
HE input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Muscle
Cell type
Skeletal muscle
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6J
isolate
n/a
breed
n/a
cultivar
n/a
ecotype
n/a
age
6 months
dev_stage
n/a
sex
male
tissue
skeletal muscle nuclei
treatment
input
genotype
ERRg_transgenic

Sequenced DNA Library

library_name
HE_input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
16067881
Reads aligned (%)
97.7
Duplicates removed (%)
10.3
Number of peaks
334 (qval < 1E-05)

mm9

Number of total reads
16067881
Reads aligned (%)
97.5
Duplicates removed (%)
10.4
Number of peaks
338 (qval < 1E-05)

Base call quality data from DBCLS SRA