SRX2931063
GSM2672012: ATRX in-frame fusion metastatic neuroblastoma SKNMM nChIP Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
Cell Culture
cell line or tissue
SKNMM
cell or tissue type
ATRX in-frame fusion metastatic neuroblastoma
treated with
none (untreated)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Native ChIP as previously described (Valle-Garcia et al., 2016). Library prepared as previously described (Valle-Garcia et al., 2016).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45334578
Reads aligned (%)
100.0
Duplicates removed (%)
8.0
Number of peaks
408 (qval < 1E-05)

hg19

Number of total reads
45334578
Reads aligned (%)
99.9
Duplicates removed (%)
8.8
Number of peaks
281 (qval < 1E-05)

Base call quality data from DBCLS SRA