Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Neural
Cell type
Hippocampus
MeSH Description
A curved elevation of GRAY MATTER extending the entire length of the floor of the TEMPORAL HORN of the LATERAL VENTRICLE (see also TEMPORAL LOBE). The hippocampus proper, subiculum, and DENTATE GYRUS constitute the hippocampal formation. Sometimes authors include the ENTORHINAL CORTEX in the hippocampal formation.

Attributes by original data submitter

Sample

source_name
hippocampus
tissue
hippocampus
testing
fear conditioned
sample
H2A.Z ChIP
age
15.5 months

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Brains were extracted and rapidly frozen in isopentane 30 min after training. Extracted hippocampi were processed for H2A.Z ChIP or RNA extraction. Libraries were prepared using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
12329037
Reads aligned (%)
96.3
Duplicates removed (%)
6.1
Number of peaks
6764 (qval < 1E-05)

mm9

Number of total reads
12329037
Reads aligned (%)
96.2
Duplicates removed (%)
6.0
Number of peaks
6754 (qval < 1E-05)

Base call quality data from DBCLS SRA