Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Epidermis
Cell type
Interfollicular epidermis cells
NA
NA

Attributes by original data submitter

Sample

source_name
Homeostatic skin interfollicular epidermis cells G9a cKO
strain
C57BL/6
age
15-week old
genotype/variation
G9a cKO

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
To purify epidermal cells, back skins from mice were incubated for 1 h in 0.25 % trypsin at 37 C. Trypsin activity was neutralized by the addition of 10% chelated FBS Ca2+-free EMEM, followed by mechanical dissociation and sequential filtration through 100 µm and 40 µm cell strainers (SPL Life Sciences). Library preparation for ATAC sequencing used 50,000 IFE or bulge stem cells FACS-sorted from three independent mice as previously described in Buenrostro et al., Nat. Methods 2013

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
82990838
Reads aligned (%)
94.6
Duplicates removed (%)
49.8
Number of peaks
18871 (qval < 1E-05)

mm9

Number of total reads
82990838
Reads aligned (%)
94.5
Duplicates removed (%)
49.9
Number of peaks
18860 (qval < 1E-05)

Base call quality data from DBCLS SRA