SRX2911517
GSM2665584: DHSseq WT FLK; Mus musculus; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived mesodermal cells
NA
NA

Attributes by original data submitter

Sample

source_name
Flk-1+ cells
cell type
ES cell derived Flk-1+ cells
genotype
WT

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
RNA extraction using collumns; AmPure beads for the ChIP-Seq; Qiagen MinElute for the DHS-seq According to Illumina Sample Preparation Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
35969077
Reads aligned (%)
94.6
Duplicates removed (%)
8.1
Number of peaks
17892 (qval < 1E-05)

mm9

Number of total reads
35969077
Reads aligned (%)
94.5
Duplicates removed (%)
8.1
Number of peaks
17888 (qval < 1E-05)

Base call quality data from DBCLS SRA