Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD8+ T cells
strain
C57BL/6
cell type
CD8+
transduction
control vector
origin
in vitro
antibody
H3K27me3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
T cells were crosslinked with 2% paraformaldehyde at room temperature for 10 min and sonicated to generate fragmented genomic DNA. Chromatin immunoprecipitation was performed using the following antibodies: anti-H3K27me3 (Millipore). For sequencing of immunoprecipitated DNA, DNA fragments were blunt-end ligated to Illumina adaptors, amplified, and sequenced by using the HiSeq 2000 platform (Illumina). For sequencing of immunoprecipitated DNA, DNA fragments were blunt-end ligated to Illumina adaptors, amplified, and sequenced by using the HiSeq 2000 platform (Illumina).

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
28072001
Reads aligned (%)
98.1
Duplicates removed (%)
25.7
Number of peaks
264 (qval < 1E-05)

mm9

Number of total reads
28072001
Reads aligned (%)
97.9
Duplicates removed (%)
25.8
Number of peaks
294 (qval < 1E-05)

Base call quality data from DBCLS SRA