SRX2897265
GSM2655958: ChIP 2i-E2f1-Rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
2i ESCs
cell type
Embryonic Stem cell
chip antibody
E2f1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
3779924
Reads aligned (%)
88.3
Duplicates removed (%)
41.0
Number of peaks
5161 (qval < 1E-05)

mm9

Number of total reads
3779924
Reads aligned (%)
87.6
Duplicates removed (%)
44.2
Number of peaks
5137 (qval < 1E-05)

Base call quality data from DBCLS SRA