SRX2897264
GSM2655957: ChIP 2i-E2f1-Rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
2i ESCs
cell type
Embryonic Stem cell
chip antibody
E2f1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
3474851
Reads aligned (%)
77.8
Duplicates removed (%)
47.7
Number of peaks
3543 (qval < 1E-05)

mm9

Number of total reads
3474851
Reads aligned (%)
77.3
Duplicates removed (%)
51.1
Number of peaks
3534 (qval < 1E-05)

Base call quality data from DBCLS SRA