GSM2653440: E14 Wild Type ATAC-seq; Mus musculus; ATAC-seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Neural
Cell type
Retinal progenitors cells
NA
NA
Attributes by original data submitter
Sample
source_name
retinal cells
cell type
retinal progenitor cells (RPCs)
developmental time point
embryonic day 14
strain
CD1
Sequenced DNA Library
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Open chromatin extraction, tagmentation and profiling (ATAC-Seq) performed based on Buenrostro et al. (2013); RNA-Seq extraction performed with Qiagen RNAeasy Mini kit; chromatin extraction, crosslinking, shearing and TF / histone- DNA-complexes were isolated with antibodies (ChIP-Seq) based on (Shang et al. 2000) ChIP-Seq; RNA-Seq; ATAC-Seq; Libraries prepared according to the Manufacturer's protocols: TruSeq Nano DNA Library Prep Kit, TruSeq total RNA Sample preparation kit and Nextera DNA sample preparation kit, Illumina® respectively.