SRX2882931
GSM2649568: HFD female H3K27ac ChIPSeq replicate2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Digestive tract
Cell type
Colon
NA
NA

Attributes by original data submitter

Sample

source_name
colon epithelium
tissue
colon epithelium
strain
C57BL/6
Sex
female
chip antibody
H3K27ac (Abcam, ab4729)
diet
high fat diet

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chip-seq libraries were prepared by Bioo NEXTflex Rapid DNA-seq Kit (cat# 514402).

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25065854
Reads aligned (%)
95.6
Duplicates removed (%)
6.8
Number of peaks
26862 (qval < 1E-05)

mm9

Number of total reads
25065854
Reads aligned (%)
95.5
Duplicates removed (%)
7.1
Number of peaks
26849 (qval < 1E-05)

Base call quality data from DBCLS SRA