SRX2882928
GSM2649565: LFD female H3K4me1 ChIPSeq replicate2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Digestive tract
Cell type
Colon
NA
NA

Attributes by original data submitter

Sample

source_name
colon epithelium
tissue
colon epithelium
strain
C57BL/6
Sex
female
chip antibody
H3K4me1 (Abcam, ab8895)
diet
low fat diet

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chip-seq libraries were prepared by Bioo NEXTflex Rapid DNA-seq Kit (cat# 514402).

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24546944
Reads aligned (%)
95.6
Duplicates removed (%)
8.5
Number of peaks
8652 (qval < 1E-05)

mm9

Number of total reads
24546944
Reads aligned (%)
95.5
Duplicates removed (%)
9.0
Number of peaks
8655 (qval < 1E-05)

Base call quality data from DBCLS SRA